Biology/Microbiology

Refereed journal article:

Harmon, A.F., D.S. Zarlenga, and M.B. Hildreth. 2006. Improved methods for isolating DNA from Ostertagia ostertagi eggs in cattle feces. Vet Parasitol 135: 297-302.

Lindsay, D., V.S. Brözel, and A. Von Holy.  2006. Biofilm / spore response in Bacillus cereus and Bacillus subtilis during nutrient limitation. J. Food Pro 69: 1168-1172.

Nichani, A.K., A. Mena, R.S. Kaushik, G.K. Mutwiri, H.G.G. Townsend, R. Hecker, A.M. Krieg, L.A. Babiuk, and P.J. Griebel. 2006. Stimulation of innate immune responses by CpG oligodeoxynucleotide in newborn lambs can reduce bovine herpes virus-1 shedding. Oligonucleotides 16: 58-67.

Ozgen, M., R.N. Reese, A.Z. Tulio Jr., A.R. Miller, and J.C. Scheerens. 2006. Modified ABTS method to measure antioxidant activity of selected small fruits and comparison to FRAP and DPPH methods. J Agricult Food Chem 54: 1151-1157.

Ozgen, M., A.Z. Tulio, A.M. Chanon, N. Janakiraman, R.N. Reese, A.R. Miller, and J.C. Scheerens. 2006.  Phytonutrient accumulation and antioxidant capacity at eight developmental stages of black raspberry fruit. Hortscience 41(4): 1082-1082.

Piechowski, K.,  R.S.K. Majerle, D.P. Mathees, and R.N. Reese. 2006. Identification of potentially allelopathic isobutylamides in Echinacea angustifolia D.C. roots. J Biol Sci 6: 978-984.

Troelstrup, N.H., Jr., G.L. Peterson, and C.R. McMullen. 2006. Investigations in Biology, 8th ed. Pearson Custom Publishing, Boston.

Tulio,  A.Z., A.M. Chanon, N. Janakiraman, G.D. Ozgen, M Stoner, R.N. Reese, A.R. Miller, and J.C. Scheerens . 2006.  Effects of storage temperatures on the antioxidant capacity and anthocyanin contents of black raspberries. Hortscience 41(4): 1043.

Vilain, S. and V.S. Brözel. 2006. Multivariate approach to comparing whole-cell proteomes of Bacillus cereus indicates a biofilm-specific proteome. J Prot Res5: 1924-1930.

Vilain S., Y. Luo, M.B. Hildreth, and V.S. Brozel. 2006. Analysis of the life cycle of the soil saprophyte Bacillus cereus in liquid soil extract and in soil. Appl Environ Microbiol 72(7): 4970-7.

Wang, X., A.J.M. Rosa, H.N. Oliverira, G.J.M. Rosa, X. Guo, M. Travnicek, and T. Girshick. 2006. Transcriptome of local innate and adaptive immunity during early phase of infectious bronchitis virus infection. Viral Immunol 19(4): 768-74.

Wang, X.  M. Eaton, M. Mayer, H. Li, D. He, E. Nelson, and J. Christopher-Hennings. 2006. Porcine reproductive and respiratory syndrome virus productively infects monocyte-derived dendritic cells and compromises their antigen-presenting ability. Arch Virol (Epub

West, T.P. 2006. Pyrimidine base supplementation effects curdlan production by Agrobacterium sp. ATCC 31749. J Basic Microbiol 46: 153.

Wyzgoski,  F.J., A.R. Miller, J.C. Scheerens, P.L. Rinaldi, B.L. Bishop, R.N. Reese, M. Ozgen, A.Z. Tulio, M.M.Giusti, and  J.A. Bomser.  2006. Nuclear magnetic resonance spectroscopy-based approach to profile biologically active plant metabolites using black raspberry inhibition of colon cancer cell proliferation as a model system. Hortscience 41(4): 1000.

Xie, G. and T.P. West. 2006. Comparison of citric acid production by Aspergillus niger ATCC 9029 and ATCC 12846 on corn distillers’ grains with solubles. Res J Microbiol 1: 540.

Xie, G., T.P. West. 2006. Citric acid production by Aspergillus niger on wet corn distillers grains. Lett Appl Microbiol 43: 269.

Xie, G. and T.P. West. 2006. Citric acid production by Aspergillus niger on corn distillers’ grains with solubles. Res J Microbiol 1:228.

 

Other reports:

Beyer, R.J., C.J. Wulf, J.S. Schaeffer,  M.M. McKenzie, A.N. Rounds, R.A. Godtland, R.A. Hoffman, C.D. Carlson, and M.B. Hildreth.  2006.  West Nile virus infection rates and Culex tarsalis population dynamics at a farm site in the James River Valley of east-central South Dakota. SD Acad Sci.

Bharathan, M., D.J. Schingoethe, R.S. Kaushik, K.F. Kalscheur, A.R. Hippen, and G. Moorkanat. 2006. Immune response in dairy cows fed fish oil and condensed corn distillers solubles. Amer Dairy Sci Assoc and Amer Animal Sci Assoc joint mtg.

Bommareddy, A., X. Zhang, D. Schrader, R. Kaushik, and C. Dwivedi. 2006. Effects of mammalian lignans and α-linolenic acid on human colon cancer CACO-2 cells.  SD EPSCor State Conf.

Bommareddy, A., X. Zhang, D. Schrader, R.S. Kaushik, and C. Dwivedi. 2006. Inhibition of cell proliferation and induction of apoptosis of human colon cancer, CACO-2 cells by lignans. Pharmacy Research Presentations, SDSU.

Chakraborty, P., W. Gibbons, and K. Muthumurappan. 2006. Optimizing condensed corn solubles as a medium to produce polyhydroxyalkanoate in-vitro using Ralstonia eutropha. SDSU Research Day.

Christie, A., S. Vilain, S. Gibson, D. Francis, and V. Brözel.  2006. Growth and survival of Escherichia coli O157:H7 in soil organic matter. Amer Soc for Microbiology NC mtg.

Christie, A., S. Vilain, S. Gibson, D. Francis,  and V. Brözel. 2006.  Growth of Escherichia coli O157:H7 in soil organic matter resulting in a unique phenotype. Amer Soc for Microbiology NC mtg.

Dominiack, E. and N.H. Troelstrup, Jr. 2006. Location and characteristics of springs contributing water to the Oak Lake basin.  Oak Lake Research Retreat.

Dozark, K. and N.H. Troelstrup, Jr. 2006. Aquatic macroinvertebrate community response to regional sediment loads in the littoral zone of a prairie pothole lake. Oak Lake Research Retreat.

Eaton, M., W.J. Bowers, H.J. Federoff, and  X.Wang.  2006. Immunogenicity and protection efficacy of a herpes simplex virus-based amplicon vector expressing codon-optimized glycoprotein 5 of PRRSV.  Int PRRS symp.
 Eaton, M. 2006.  Immunogenicity and protection efficacy of a herpes simplex virus-based amplicon vector expressing codon-optimized glycoprotein 5 of PRRSV. SDSU MS thesis.

Ekenstedt, J., J. Javers, and W.R. Gibbons. 2006. A secondary fermentation of distillers’ grains by Sclerotium glucanicum will add value to ethanol production byproducts. Amer Soc for Microbiology, NC mtg.

Fuhrman, L., B. Bleakey, and F. Halaweish.  2006.   Photorhabdus luminescens and Photorhabdus asymbiotica:  similar secondary metabolites? Amer Soc for Microbiology NC mtg (abstr).

George, S., Y. Oh, S. J. Lindblom, S. Vilain, A.J.M. Rosa, D. Francis, V. Brözel, and R.S. Kaushik. 2006.  Lectin binding profile on the small intestine of 5-week old pigs in response to use of antibiotics as growth promotants  SD Acad Sci.

George, S., K. Circle, S. Lindblom, S. Vilain, A. Rosa, D.H. Francis, V.S.Brözel, and R.S. Kaushik. 2006.  Expression of toll-like receptors in the small intestine of 5-week old pigs in response to the growth promotant feed antibiotic chlortetracycline and absence of intestinal microbiota.  Amer Soc for Microbiology NC mtg.

George, S., K. Circle, S. Lindblom, S. Vilain, A. Rosa, D.H. Francis, V.S. Brözel, and R.S. Kaushik. 2006. Expression of toll-like receptors in the small intestine of 5-week old pigs in response to the growth promotant feed antibiotic chlortetracycline and absence of intestinal microbiota. Conf Research Workers in Animal Diseases (CRWAD).

Gibbons, W.R. 2006. Panel, Starting and sustaining a research related company. Celebrating Research, Scholarship and Creative Activities at SDSU.

Gibbons, W.R. 2006. Production of polyhydroxyalkanoates from industrial waste streams. Celebrating Research, Scholarship and Creative Activities at SDSU.

Gibbons, W.R. 2006. Value added research. South Dakota corn research tour.

Gibbons, W.R. 2006. Converting our biomass resources into ethanol, and beyond. Ag Horizons Conf, Pierre.

Gibbons, W.R.  2006. South Dakota 2010 research center panel. South Dakota Biotech Summit.

Gibbons, W.R., et al. 2006. Biobased product research at SDSU. Dakota Fest.

Gibbons, W.R., et al. 2006. Biobased product research at SDSU. South Dakota State Fair.

Gibson, S.A.,  K.A. Boegler, and V.S. Brözel.  2006. Bacterial and archaeal diversity in sediments of Oak Lake, a hypereutrophic prairie pothole. Amer Soc for Microbiology.

Gill, A.L. and  B.H. Bleakley.  2006.  Use of chemical and physical stressors, 8.5 percent NaCl and 47 C, to assay populations of a Bacillus strain used to control Fusarium headblight on wheat heads in field plots. Amer Soc for Microbiology NC mtg (abstr).
 
Gill, A.L. and B.H. Bleakley.  2006.  Use of chemical and physical stressors, 8.5 percent NaCl and 47 C, to assay populations of a Bacillus strain used to control Fusarium head blight on wheat heads in field plots. National Fusarium Head Blight Forum: 9 (abstr).

Guo, X., D. Chen, A.J.M. Rosa, and X. Wang.  2006. Kinetics of local gene transcription profiles during the development of mucosal immunity using avian infectious bronchitis virus as a model system. Amer Soc for Microbiology NC mtg.

Harmon, A.F., D.S. Zarlenga, and M.B. Hildreth. 2006.   Linearity and efficiency of a multiplex real-time PCR assay using DNA derived from Haemonchus contortus, Ostertagia ostertagi, and Cooperia oncophora eggs and from plasmids generated for each species. Amer Assoc of Veterinary Parasitologists.

Harmon, A.F. and M.B. Hildreth.  2006.  Quantifiable amplification of DNA from Haemonchus contortus eggs with real-time PCR. SD Acad Sci.

Hildreth, M.B., R.A. Hoffman, C. Carlson,  R. Beyer, A. Rounds, R. Gotland, C. Wulf, J. Schaeffer, M. McKenzie, L. Weyrich , and L. Kightlinger.  2006.   West Nile virus surveillance in mosquitoes from South Dakota during the 2003 through 2005 transmission seasons. Natl Conf on West Nile Virus in the United States.

Kaushik, R.S., S. George, J. Lin, and A. Erickson.  2006. Biochemical characterization of porcine intestinal epithelial cell lines for the expression of galectin-4, cytokeratin, vimentin, alpha-smooth muscle actin and desmin. University Research Day, SDSU.

Kaushik, R.S.,  S. George, A. Young, and D. Francis.  2006. Lectin binding profile of porcine intestinal epithelial cell lines. University Research Day, SDSU.

Koh, S.Y., S. George, V. Brözel, D. Francis, R. Moxley, and R.S. Kaushik. 2006.  Porcine intestinal epithelial cell lines as an in vitro model for studying pathogenesis of enterotoxogenic Escherichia coli. Amer Soc for Microbiology NC mtg.

Koh, S.Y., S. George, V. Brözel, D. Francis, and R.S. Kaushik.  2006. Porcine intestinal epithelial cell lines as an in vitro model for studying pathogenesis of enterotoxigenic Escherichia coli. University Research Day, SDSU.

Lehnert, K., V. Brözel, S. Gibson, and S. Clay. 2006.  Antibacterials in manure influence soil microbial activity. Amer Soc for Microbiology NC mtg.

Leonard, C.M.,  L.A. Dhlamini, E. Gove, V.S. Brözel, and J.B. Weyers.  2006.  Effect of β-lactam antibiotics on a biofilm forming clinical Listeria monocytogenes isolate. Amer Soc for Microbiology.

Lindblom, S., Y. Luo, L. Weyrich, C. Scofield, S. Vilain, S. George, R. Kaushik, D. Francis, A. Rosa, and V. Brözel.  2006.   Eubacterial diversity of the porcine ileum of weanling pigs in response to use of chlortetracycline as growth promotant. Amer Soc for Microbiology NC mtg.

Lorenzen, P.B. 2006. Optimal macroinvertebrate metrics for assessing biotic integrity of intermittent prairie streams. SDSU MS thesis.

Mateo, K.S., P.R. Hardwidge, W. Zhang, R. Kaushik, and D.H. Francis. 2006. Effect of heat-labile enterotoxin expression on the ability of enterotoxigenic Escherichia coli to colonize the IPEC-J2 porcine epithelial cell line. Amer Soc for Microbiology NC mtg.

Mayer, M. 2006. Evaluation of murine cytomegalovirus as a potential viral vector. SDSU MS thesis.

Moorkanat, G., A.F. Harmon, Y. Oh, L. Hollar, D. Francis, M.B. Hildreth, and R.S. Raushik.  2006.  Pathology and dissemination of Encephalitozoon intestinalis in gnotobiotic piglets. SD Acad Sci.

Moorkanat, G.,  A.F. Harmon, Y. Oh, L. Hollar, D. Francis, M.B. Hildreth, and R.S. Kaushik. 2006. PCR detection of Encephalitozoon intestinalis in gnotobiotic piglets. Amer Soc for Microbiology NC mtg.

Moutsoglou, D., X. Wang. Development of an immortalization cell line for pig mesenchymal stem cells. Amer Soc for Microbiology NC mtg.

Reese, R.N, F.J. Wyzgoski, A.R. Miller, J.C. Scheerens, P.L. Rinaldi, B. Bishop, M. Ozgen,  A.J. Tulio, M.M. Giusti, and J.A. Bomser. 2006. Biologically active plant metabolites in black raspberries: a nuclear magnetic resonance (NMR) spectroscopy-based approach to identify anticancer compounds. Bot Soc Amer ann mtg: 411 (abstr).

Ruden, K.R., B. Bleakley, S.M. Thompson, K. Maxson-Stein, and M.A. Draper.  2006.  Uniform trials for the performance of biological control agents in the suppression of Fusarium head blight in South Dakota. National Fusarium Head Blight Forum: 20 (abstr).

Rust, J.D. and N.H. Troelstrup, Jr. 2006. Descriptive analysis of aquatic invertebrate communities in wadeable and non-wadeable streams of the Northern Great Plains network. SD Acad Sci.

Rust, J.D. 2006. Establishing baseline data for aquatic resources in national parks of the Northern Great Plains network.  SDSU MS thesis.

Schrader, D., A. Bommareddy, X. Zhang, R.S. Kaushik, H. Fahmy, and C. Dwivedi.  2006. Effects of sarcophine-diol on human epidermoid carcinoma A431 cells and human colon cancer caco-2 cells. Pharmacy Research Presentations, SDSU.

Scofield, C., S. Lindblom, A. Rosa, S. Vilain, S. George, R. Kaushik, D. Francis and V. Brözel.  2006.  Archaea associated with the porcine ileum of weaned pigs. SD Acad Sci.

Snyder, E. and W.R. Gibbons. 2006. Optimizing the production of volatile fatty acids from whole stillage using an acclimated rumen culture. Amer Soc for Microbiology, NC mtg.

Troelstrup, N.H., Jr. 2006. Versatile biological indicators: a cross-system comparison. Eastern SD Water Conf.

Troelstrup, N.H., Jr. and J.D. Rust. 2006. Vital signs monitoring in our parks: what to measure?  SD Acad Sci.

Troelstrup, N.H., Jr., J.D. Rust, and D.S. Licht. 2006. Aquatic macroinvertebrate biotic integrity as a vital sign for monitoring park conditions: metric selection and baseline data for the Northern Great Plains network. Natl Park Service Inventory & Monitoring Program.

Troelstrup, N.H., Jr. 2006. Aquatic vital signs development for the Northern Great Plains network. Northern Great Plains Network Inventory & Monitoring Program, Rapid City.

West, T.P., B. Nemmers. 2006. Corn-based curdlan production from distillers’ solubles. Amer Soc for Microbiology NC mtg.
 
West, T.P., B. Nemmers. 2006. Curdlan production by Agrobacterium sp. ATCC 31749 on thin stillage. Amer Soc for Microbiology NC mtg (abstr).

West, T.P. and B.V. Reed. 2006. Comparison of succinylglycan production relative to carbon source.  Soc Ind Microbiol (abstr).

West, T.P. and B.V. Reed. 2006. Effect of treatment of corn distillers grains with solubles on fungal fumaric acid production. Soc Ind Microbiol (abstr).

West, T.P. and B. Reed. 2006. Corn based curdlan production from condensed corn distillers’ solubles. Proc Corn Utilization & Technology Conf (abstr).

West, T.P. and B. Reed. 2006. Comparison of fungal fumaric acid production from corn distillers’ grains with solubles. Proc Corn Utilization & Technology Conf (abstr).

Weyrich, L., S. Lindblom, C. Scofield, A. Rosa, S. Vilain, S. George, R. Kaushik, D. Francis, and V. Brözel.  2006.  Eubacterial diversity of the porcine ileum of weaned Pigs. SD Acad Sci.

Weyrich, L. Y. Luo, J. Sutton, S. Vilain, and V. Brözel. 2006.  Genes contributing to induced multicellularity of Bacillus cereus growing in soil. Amer Soc for Microbiology NC mtg.

Wyzgoski, F.J., P.L. Rinaldi, R.N. Reese, M. Ozgen, A.J. Tulio, A.R. Miller, J.C. Scheerens, B.  Bishop, M.M. Giusti, P. Jing, and J.L. Bomser. 2006. Using high field cryoprobe NMR experiments and multivariate analysis to identify bioactive components in black raspberries.   ACS natl mtg ANYL-176 (abstr).

Xie, G. and T.P. West. 2006. Citric acid production by Aspergillus niger strains grown on condensed corn distillers solubles. Abst Amer Soc Microbiol.

Xie, G. 2006. Citric acid production by Aspergillus niger strains grown on corn substrates from ethanol fermentation. SDSU PhD dissertation. 

Yuen, G.Y., C.C. Jochum, K.R. Ruden, L.E. Sweets, B.H. Bleakley, and M.A. Draper.  2006.  Results from the standardized evaluation of biological agents for the control of Fusarium head blight on wheat and barley.  National Fusarium Head Blight Forum: 27-30.

Zhang, X., A. Bommareddy, D. Schrader, R.S. Kaushik, H. Fahmy, and C. Dwivedi. 2006.  Chemopreventive effects of sarcophine-diol on UVB -induced skin tumor development in SKH-1 hairless mice. Pharmacy Research Presentations, SDSU.